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AlphaFold

By Augmented Nature Research

Access the AlphaFold Protein Structure Database for predictions, analysis, and visualization.

Description

A comprehensive MCP server that provides access to the AlphaFold Protein Structure Database...

Available tools

Batch Structure Info

Get info for multiple proteins.

Check Availability

Check if an AlphaFold structure is available...

Compare Structures

Compare metadata for multiple structures.

Download Structure File

Download AlphaFold structure file...

Export for ChimeraX

Generate a script for ChimeraX.

Export for PyMOL

Generate a script for PyMOL.

Get Prediction Metadata

Get metadata about a prediction.

Get Structure

Get AlphaFold structure prediction...

List by Organism

List all structures for an organism.

Search Structures

Search for structures by protein name or gene.

Example prompts

Check if a structure is available for the protein TP53
Download the PDB file for protein Q8N726
Prepare the structure of P04637 for PyMOL visualization
List all available protein structures for Homo sapiens

How it works

1. Install

One-click install from the Simtheory store.

2. Connect

Authorize access to your AlphaFold account.

3. Use

Your AI can now interact with AlphaFold.

Install

Log in if you already have an account.

Details

Version 1.0.0
Updated Apr 21, 2026
Category Research
Publisher Augmented Nature

Features

Cloud hosted — no setup required
Secure authentication
Automatic updates
Works with all AI models

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